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Omics-based Predictors of NAFLD/Potential NASH

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ClinicalTrials.gov Identifier: NCT05301231
Recruitment Status : Not yet recruiting
First Posted : March 29, 2022
Last Update Posted : June 3, 2022
Sponsor:
Information provided by (Responsible Party):
Prof.Dr. Ammal Mokhtar Metwally, National Research Centre, Egypt

Brief Summary:
The cascade of care for the non-alcoholic fatty liver disease (NAFLD) and its progression to non-alcoholic steatohepatitis (NASH) requires crossing the barriers for their diagnosis and treatment. The multifactorial nature of NAFLD/NASH limits their diagnosis by a single factor solely. This project aimed at developing a powerful composite marker panel based on multi-omics technologies to detect NAFLD without or with fibrosis (potential for NASH) in high-risk populations (obesity, type 2 diabetes, hypertensive, dyslipidemia). This project is an exploratory study to unrevealing the intra-heterogeneity and inter-similarities of NAFLD without and with fibrosis versus those of healthy individuals. The molecular and clinical characteristics of 450 participants (225 adults aged 30-60 years and 225 children aged 12 -18 years) will be investigated; 150 NAFLD patients without, 150 NAFLD patients with fibrosis (potential NASH) compared to 150 healthy individuals. Detection of genetic polymorphism of SNP of 10 gene variants involved with NAFLD without and with fibrosis, gene discovery and molecular diagnosis of dyslipidemia using next-generation sequencing and whole-exome sequencing (genomics), the expression level for the top 5 of 168-panel genes of plasma miRNAs (epi-genomics), the glycosylation pattern of five glycoproteins (proteomics), salivary analysis of ten microbiomes and five microbial-related metabolites (metabolomics) will be investigated. Eventually, the development of precision therapies to target NAFLD without and with fibrosis and possibly reverse fibrosis could be achieved.

Condition or disease Intervention/treatment
Non-Alcoholic Fatty Liver Disease Non Alcoholic Steatohepatitis Diagnostic Test: Genomics (DNA Extraction) Diagnostic Test: Epi-genomics Diagnostic Test: Proteomics (Glycoproteomics) Diagnostic Test: Salivary Metabolomics Behavioral: Individualized counselling for behavioural modification

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Study Type : Observational [Patient Registry]
Estimated Enrollment : 450 participants
Observational Model: Case-Control
Time Perspective: Cross-Sectional
Target Follow-Up Duration: 3 Months
Official Title: Omics-based Predictors of NAFLD/Potential NASH: A New Era Towards Valid and Reliable Non-invasive Diagnosis and Personalized Therapy
Estimated Study Start Date : August 1, 2022
Estimated Primary Completion Date : December 30, 2023
Estimated Study Completion Date : April 30, 2024


Group/Cohort Intervention/treatment
NAFLD group without fibrosis
Group diagnosed to have NAFLD without fibrosis according to the recommendation of EASL; AASLD (13) and ESPGHAN Hepatology Committee (14), (75 adults aged 30-60 years, 75 children aged 12-18 years) ,
Diagnostic Test: Genomics (DNA Extraction)

Blood samples for detection of:

Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS


Diagnostic Test: Epi-genomics
  • blood samples for detection of Expression profiling of plasma microRNAs
  • PCR array to determine the altered miRNAs for 168 plasma miRNAs (12 cases)
  • Expression analysis of top 5 altered miRNAs (All)

Diagnostic Test: Proteomics (Glycoproteomics)
blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG)

Diagnostic Test: Salivary Metabolomics

Salivary Samples for detecting Salivary Metabolomics

  1. Genome analysis (Identification of microbial strains common among Egyptians BY apid RT-PCR (DNA sequencing: 16S rRNA gene amplicons)
  2. Microbiome related Metabolites Identification using GC-MS Analysis (the top 5 identified microbial-related metabolites) as metabolomics
  3. Meta-genomic assess of three microbiome-related metabolites; lactoferrin, (LPS), (IgA) BY Commercial ELISA kits

Behavioral: Individualized counselling for behavioural modification

Individualized counselling for behavioral modification (3 sessions):

Nutritional education, Promotion of physical activities and Cognitive & Psychological support


NAFLD group with fibrosis (potential NASH)
Group diagnosed to have NAFLD with fibrosis according to the recommendation of EASL; AASLD (13) and ESPGHAN Hepatology Committee (14), (75 adults aged 30-60 years, 75 children aged 12-18 years),
Diagnostic Test: Genomics (DNA Extraction)

Blood samples for detection of:

Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS


Diagnostic Test: Epi-genomics
  • blood samples for detection of Expression profiling of plasma microRNAs
  • PCR array to determine the altered miRNAs for 168 plasma miRNAs (12 cases)
  • Expression analysis of top 5 altered miRNAs (All)

Diagnostic Test: Proteomics (Glycoproteomics)
blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG)

Diagnostic Test: Salivary Metabolomics

Salivary Samples for detecting Salivary Metabolomics

  1. Genome analysis (Identification of microbial strains common among Egyptians BY apid RT-PCR (DNA sequencing: 16S rRNA gene amplicons)
  2. Microbiome related Metabolites Identification using GC-MS Analysis (the top 5 identified microbial-related metabolites) as metabolomics
  3. Meta-genomic assess of three microbiome-related metabolites; lactoferrin, (LPS), (IgA) BY Commercial ELISA kits

Behavioral: Individualized counselling for behavioural modification

Individualized counselling for behavioral modification (3 sessions):

Nutritional education, Promotion of physical activities and Cognitive & Psychological support


Healthy group
Healthy control group age and sex-matched with the previous group (75 adults aged 30-60 years, 75 children aged 12-18 years),
Diagnostic Test: Genomics (DNA Extraction)

Blood samples for detection of:

Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS


Diagnostic Test: Epi-genomics
  • blood samples for detection of Expression profiling of plasma microRNAs
  • PCR array to determine the altered miRNAs for 168 plasma miRNAs (12 cases)
  • Expression analysis of top 5 altered miRNAs (All)

Diagnostic Test: Proteomics (Glycoproteomics)
blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG)

Diagnostic Test: Salivary Metabolomics

Salivary Samples for detecting Salivary Metabolomics

  1. Genome analysis (Identification of microbial strains common among Egyptians BY apid RT-PCR (DNA sequencing: 16S rRNA gene amplicons)
  2. Microbiome related Metabolites Identification using GC-MS Analysis (the top 5 identified microbial-related metabolites) as metabolomics
  3. Meta-genomic assess of three microbiome-related metabolites; lactoferrin, (LPS), (IgA) BY Commercial ELISA kits

Behavioral: Individualized counselling for behavioural modification

Individualized counselling for behavioral modification (3 sessions):

Nutritional education, Promotion of physical activities and Cognitive & Psychological support





Primary Outcome Measures :
  1. Dyslipidemia-related variants related commonly to the Egyptian population [ Time Frame: 12 months after the start of the recruitment ]
    NGS panels of dyslipidemia main genes; (LDLR), (APOB), (PCSK9), and (LDLRAP) will be customized by Illumina to screen for mutations in 30 participants (as detected by OR in relation to controls).

  2. The most significant predisposing or protective genetic variants out of the studied risk and protective alleles associated with NAFLD without and with fibrosis in the Egyptian population. [ Time Frame: 12 months after the start of the recruitment ]
    The identification of people who carry a specific genetic variant predisposing them to NAFLD with fibrosis Through gene polymorphisms (as detected by OR in relation to controls)

  3. The expression level of altered plasma mRNAs detected among the Egyptian population [ Time Frame: 12 months after the start of the recruitment ]
    Expression profiling of plasma microRNAs expression profiling will be performed by locked nucleic acid PCR array for high plasma miRNAs. This will be applied to 2 subjects from each group (a total of 12 subjects).

  4. The glycosylation profile of the studied N- and O-glycoproteins among Egyptians [ Time Frame: 12 months after the start of the recruitment ]
    identifying the glycosylation pattern transferrin, apolipoprotein C III (Apoc III), haptoglobin, Mac2 binding protein, IgG (Santa Cruz, USA). The protein bands were visualized as a chemiluminescence reaction using ECL (Novex, Invitrogen, Thermo Scientific, US), and the images will be taken using a CDD camera.

  5. Differences in the compositions and types of the bacterial isolates among the Egyptian populations that are linked to NAFLD patients without and with fibrosis vs. controls [ Time Frame: 12 months after the start of the recruitment ]
    (out of 10 bacterial isolates) using -Rapid RT-PCR test for 16S rRNA gene amplicon library preparation and sequencing

  6. Concentration level of the high salivary detected microbiome-related metabolites [ Time Frame: 12 months after the start of the recruitment ]
    The salivary concentrations of the high salivary detected microbiome-related metabolites using Gas Chromatography-Mass Spectrometer (GC-MS) Analysis and their predictive value (Odds Ratio)

  7. Production of a novel non-invasive biomarker panel to be used for NAFLD without and with fibrosis prediction and diagnosis. [ Time Frame: 24 months from the start of the study ]
    Using a logistic regression prediction model for the identification of significant multi-omics biomarkers will help in the development of a unique Egyptian scoring system.



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Ages Eligible for Study:   12 Years to 60 Years   (Child, Adult)
Sexes Eligible for Study:   All
Sampling Method:   Probability Sample
Study Population
The study will be carried out on 450 individuals, 225 of them will be children aged 12-18 years and 225 will be adults in the age range 30-60 years according to pre-set inclusion and exclusion criteria. The enrolled adults and children will be diagnosed according to the recommendation of EASL; AASLD (13) and ESPGHAN Hepatology Committee (14) Respectively
Criteria

Inclusion Criteria:

  • Age: 30-60 years for adults and 12-18 years for children
  • BMI: ≥ 25 for adults, BMI: ≥ 85th and <94th percentile for overweight and ≥95th percentile for obese children
  • Pre-diabetics and type 2 diabetes
  • Dyslipidemia
  • Hypertension
  • Family history of NASH

Exclusion Criteria:

  • • Alcohol consumption

    • Type 1 diabetes
    • Other chronic liver diseases
    • Malignant diseases

Information from the National Library of Medicine

To learn more about this study, you or your doctor may contact the study research staff using the contact information provided by the sponsor.

Please refer to this study by its ClinicalTrials.gov identifier (NCT number): NCT05301231


Contacts
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Contact: Ammal M Metwally, PhD (MD) +201222280640 ammal_mok@yahoo.com
Contact: Iman H Kamel, PhD (MD) +201222906160 imankamelh@gmail.com

Locations
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Egypt
National Research Centre
Giza, Al Jizah, Egypt, 12411
Sponsors and Collaborators
National Research Centre, Egypt
Investigators
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Principal Investigator: Ammal M Metwally National Research Centre of Egypt
Publications:
Giraudi PJ, Stephenson AM, Tiribelli C, Rosso N. Novel high-throughput applications for NAFLD diagnostics and biomarker discovery. Hepatoma Res 2021; 7:2
Beattie M, Dhawan A, Puntis JWL, et al., Non alcoholic fatty liver disease, chapter 61;520-528 Oxford Specialist Handbook of Paediatric Gastroenterology, Hepatology, and nutrition. Oxford university press, 3rd edition,2018
Chow, S.C.; Shao, J.; Wang, H. 2003. Sample Size Calculations in Clinical Research. Marcel Dekker. New York.

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Responsible Party: Prof.Dr. Ammal Mokhtar Metwally, Prof. Public Health and Community Medicine, National Research Centre, Egypt
ClinicalTrials.gov Identifier: NCT05301231    
Other Study ID Numbers: 20211129
First Posted: March 29, 2022    Key Record Dates
Last Update Posted: June 3, 2022
Last Verified: June 2022
Individual Participant Data (IPD) Sharing Statement:
Plan to Share IPD: Yes
Plan Description: All IPD that underlie results in a publication will be shared
Supporting Materials: Study Protocol
Clinical Study Report (CSR)
Time Frame: After the end of the project implementation
Access Criteria: the data will be accessed through a drive with a link

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Studies a U.S. FDA-regulated Drug Product: No
Studies a U.S. FDA-regulated Device Product: No
Keywords provided by Prof.Dr. Ammal Mokhtar Metwally, National Research Centre, Egypt:
non-alcoholic fatty liver disease (NAFLD)
non-alcoholic steatohepatitis
epi-genomics
genomics
metabolomics
proteomics
Additional relevant MeSH terms:
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Liver Diseases
Fatty Liver
Non-alcoholic Fatty Liver Disease
Digestive System Diseases